PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03228.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 608aa    MW: 64657 Da    PI: 10.0287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03228.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19432482155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  Zpz_sc03228.1.g00010.1.am.mk 432 TRFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARTLRG 482
                                   589*******.**********83...36*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5092910.674144IPR011527ABC transporter type 1, transmembrane domain
PfamPF006644.2E-7144IPR011527ABC transporter type 1, transmembrane domain
SuperFamilySSF901238.24E-5249IPR011527ABC transporter type 1, transmembrane domain
Gene3DG3DSA:1.20.1560.102.3E-4246No hitNo description
CDDcd000187.60E-17432490No hitNo description
PfamPF008472.4E-12432482IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21433491IPR016177DNA-binding domain
SMARTSM003801.3E-36433496IPR001471AP2/ERF domain
PROSITE profilePS5103223.472433490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-31433490IPR001471AP2/ERF domain
PRINTSPR003671.9E-9434445IPR001471AP2/ERF domain
PRINTSPR003671.9E-9456472IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MGEHLTKRIR EQMLAKILTF EIGWFDRDEN SSGVICSQLA KDANICTELR RYLIIPLPAR  60
DDPTPRRETG RVVLCGGDGT AALTRAREVG TYRELFGCRL VLHCTAASVR SSRRGRRGTP  120
RTPVACGEKP ANLGDAFEGI SNTLSGARYL GTVGPAWTTQ AKQGIICAGR RLIIPFHLAY  180
GRKELGGATA PPPARNVCPC VRSIGTALPR AHEASSSSPT HHARHHPSTT GGDPAGRSSL  240
LSTPCQDACP GILPAGVTGK THQPHFLNSV RESRETRRSV SGPGFLLCCT HGAQRRQRAA  300
APMRCDACMI AAHEANGGGG AGAHGAPDQS PSPHKPERAG TPGSPHRRQK KKRREPRQGG  360
WWAGGGGSVA GGWECAVRGG SANKQTFQLS PPQHPRQFPD SPAPRTAGFI GGEGMRRGGP  420
VAAAGPEGDL VTRFRGVRKR PWGRYAAEIR DPAKKARVWL GTFDSAEDAA RAYDAAARTL  480
RGPKARTNFP LPVAAHHHHQ RHAAYTAPYT AVAARPAISS MSSTVESFGG ARSRPALPPR  540
PPPPPIPDGD CRSDCGSSAS VVDDDCADAA TSPSCRLPLA LDLNLPPGDC GFVCYGDEDE  600
LRLTELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20434493666ATERF1
3gcc_A2e-20434493666ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346354RRQKKKRRE
2349353KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597091e-65AK359709.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101F03.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.19e-21ethylene responsive element binding factor 3